STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Supt5hTranscription elongation factor SPT5. (831 aa)    
Predicted Functional Partners:
polr2g
DNA-directed RNA polymerase II subunit RPB7.
    
 0.996
Polr2d
DNA-directed RNA polymerase II subunit RPB4.
    
 0.996
Polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.996
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
    
 0.996
rpb-5
DNA-directed RNA polymerases I II and III subunit RPABC1.
    
 0.996
RpII18
DNA-directed RNA polymerases I II and III subunit RPABC2.
    
 0.994
POLR2J
DNA-directed RNA polymerase II subunit RPB11-a.
    
 0.992
SUPT16H
FACT complex subunit SPT16.
   
 0.990
RpII15
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.989
TCEA1
Transcription elongation factor A protein 1.
    
 0.988
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.