STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRPA1U2 small nuclear ribonucleoprotein A. (984 aa)    
Predicted Functional Partners:
Snrpb2
U2 small nuclear ribonucleoprotein B.
   
 0.997
SF3A3
Splicing factor 3A subunit 3.
   
 0.997
CSKR_9414s
Uncharacterized protein.
   
 0.995
Sf3b3
Splicing factor 3B subunit 3.
    
 0.995
SF3B1
Splicing factor 3B subunit 1.
   
 0.995
snr-4
Small nuclear ribonucleoprotein Sm D2.
   
 0.995
Sf3a1
Splicing factor 3A subunit 1.
   
 0.994
SF3B2
Splicing factor 3B subunit 2.
   
 0.994
Dhx15
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.994
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.994
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.