PSMD10 protein (Clonorchis sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PSMD10

26S proteasome non-ATPase regulatory subunit 10. (250 aa)

Predicted Functional Partners:

Psmc6

0.991

Rpt6

0.991

psmd11

0.990

Psmd1

0.990

Rpt2

0.990

Psmd13

0.989

Psmc3

0.989

PAAF1

0.989

Psmd12

0.988

Psmc2

0.988

Your Current Organism:

Clonorchis sinensis

NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PAAF1	PSMD10	H2KSJ5	A0A3R7CGD0	Proteasomal ATPase-associated factor 1.	26S proteasome non-ATPase regulatory subunit 10.	0.989
PAAF1	Psmc2	H2KSJ5	H2KTA5	Proteasomal ATPase-associated factor 1.	26S proteasome regulatory subunit T1; Belongs to the AAA ATPase family.	0.962
PAAF1	Psmc3	H2KSJ5	A0A419PCQ6	Proteasomal ATPase-associated factor 1.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.952
PAAF1	Psmc6	H2KSJ5	A0A3R7GYF5	Proteasomal ATPase-associated factor 1.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.777
PAAF1	Psmd1	H2KSJ5	A0A419PNA3	Proteasomal ATPase-associated factor 1.	26S proteasome non-ATPase regulatory subunit 1.	0.713
PAAF1	Psmd12	H2KSJ5	A0A3R7EX62	Proteasomal ATPase-associated factor 1.	26S proteasome non-ATPase regulatory subunit 12.	0.948
PAAF1	Psmd13	H2KSJ5	A0A3R7CLP1	Proteasomal ATPase-associated factor 1.	26S proteasome non-ATPase regulatory subunit 13.	0.911
PAAF1	Rpt2	H2KSJ5	G7Y889	Proteasomal ATPase-associated factor 1.	26S proteasome regulatory subunit T2; Belongs to the AAA ATPase family.	0.886
PAAF1	Rpt6	H2KSJ5	A0A419PN67	Proteasomal ATPase-associated factor 1.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.987
PAAF1	psmd11	H2KSJ5	A0A3R7F9X0	Proteasomal ATPase-associated factor 1.	26S proteasome non-ATPase regulatory subunit 11.	0.750
PSMD10	PAAF1	A0A3R7CGD0	H2KSJ5	26S proteasome non-ATPase regulatory subunit 10.	Proteasomal ATPase-associated factor 1.	0.989
PSMD10	Psmc2	A0A3R7CGD0	H2KTA5	26S proteasome non-ATPase regulatory subunit 10.	26S proteasome regulatory subunit T1; Belongs to the AAA ATPase family.	0.988
PSMD10	Psmc3	A0A3R7CGD0	A0A419PCQ6	26S proteasome non-ATPase regulatory subunit 10.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.989
PSMD10	Psmc6	A0A3R7CGD0	A0A3R7GYF5	26S proteasome non-ATPase regulatory subunit 10.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.991
PSMD10	Psmd1	A0A3R7CGD0	A0A419PNA3	26S proteasome non-ATPase regulatory subunit 10.	26S proteasome non-ATPase regulatory subunit 1.	0.990
PSMD10	Psmd12	A0A3R7CGD0	A0A3R7EX62	26S proteasome non-ATPase regulatory subunit 10.	26S proteasome non-ATPase regulatory subunit 12.	0.988
PSMD10	Psmd13	A0A3R7CGD0	A0A3R7CLP1	26S proteasome non-ATPase regulatory subunit 10.	26S proteasome non-ATPase regulatory subunit 13.	0.989
PSMD10	Rpt2	A0A3R7CGD0	G7Y889	26S proteasome non-ATPase regulatory subunit 10.	26S proteasome regulatory subunit T2; Belongs to the AAA ATPase family.	0.990
PSMD10	Rpt6	A0A3R7CGD0	A0A419PN67	26S proteasome non-ATPase regulatory subunit 10.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.991
PSMD10	psmd11	A0A3R7CGD0	A0A3R7F9X0	26S proteasome non-ATPase regulatory subunit 10.	26S proteasome non-ATPase regulatory subunit 11.	0.990