UBFD1 protein (Clonorchis sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UBFD1

Ubiquitin domain-containing protein UBFD1. (266 aa)

Predicted Functional Partners:

Psmc2

0.912

PSMD7

0.909

Rpn11

0.909

CSKR_11589s

0.907

Psmd12

0.905

Rpt6

0.905

Psmc3

0.904

Rpt2

0.903

Psmd13

0.902

Psmd3

0.902

Your Current Organism:

Clonorchis sinensis

NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSKR_11589s	PSMD7	A0A419QCL4	A0A3R7DC48	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome non-ATPase regulatory subunit 7.	0.999
CSKR_11589s	Psmc2	A0A419QCL4	H2KTA5	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome regulatory subunit T1; Belongs to the AAA ATPase family.	0.998
CSKR_11589s	Psmc3	A0A419QCL4	A0A419PCQ6	26S proteasome non-ATPase regulatory subunit 4.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
CSKR_11589s	Psmd12	A0A419QCL4	A0A3R7EX62	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome non-ATPase regulatory subunit 12.	0.999
CSKR_11589s	Psmd13	A0A419QCL4	A0A3R7CLP1	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome non-ATPase regulatory subunit 13.	0.999
CSKR_11589s	Psmd3	A0A419QCL4	A0A419Q2I7	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome non-ATPase regulatory subunit 3.	0.998
CSKR_11589s	Rpn11	A0A419QCL4	A0A419Q371	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome non-ATPase regulatory subunit 14.	0.999
CSKR_11589s	Rpt2	A0A419QCL4	G7Y889	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome regulatory subunit T2; Belongs to the AAA ATPase family.	0.999
CSKR_11589s	Rpt6	A0A419QCL4	A0A419PN67	26S proteasome non-ATPase regulatory subunit 4.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
CSKR_11589s	UBFD1	A0A419QCL4	A0A3R7CQA9	26S proteasome non-ATPase regulatory subunit 4.	Ubiquitin domain-containing protein UBFD1.	0.907
PSMD7	CSKR_11589s	A0A3R7DC48	A0A419QCL4	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome non-ATPase regulatory subunit 4.	0.999
PSMD7	Psmc2	A0A3R7DC48	H2KTA5	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome regulatory subunit T1; Belongs to the AAA ATPase family.	0.999
PSMD7	Psmc3	A0A3R7DC48	A0A419PCQ6	26S proteasome non-ATPase regulatory subunit 7.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
PSMD7	Psmd12	A0A3R7DC48	A0A3R7EX62	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome non-ATPase regulatory subunit 12.	0.999
PSMD7	Psmd13	A0A3R7DC48	A0A3R7CLP1	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome non-ATPase regulatory subunit 13.	0.999
PSMD7	Psmd3	A0A3R7DC48	A0A419Q2I7	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome non-ATPase regulatory subunit 3.	0.999
PSMD7	Rpn11	A0A3R7DC48	A0A419Q371	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome non-ATPase regulatory subunit 14.	0.999
PSMD7	Rpt2	A0A3R7DC48	G7Y889	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome regulatory subunit T2; Belongs to the AAA ATPase family.	0.999
PSMD7	Rpt6	A0A3R7DC48	A0A419PN67	26S proteasome non-ATPase regulatory subunit 7.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
PSMD7	UBFD1	A0A3R7DC48	A0A3R7CQA9	26S proteasome non-ATPase regulatory subunit 7.	Ubiquitin domain-containing protein UBFD1.	0.909