STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm42RNA-binding protein 42. (458 aa)    
Predicted Functional Partners:
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.953
jub
LIM domain-containing protein jub.
   
 0.901
ZYX
Zyxin.
   
 0.901
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
  0.892
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.867
USP39
U4/U6.U5 tri-snRNP-associated protein 2.
    
  0.853
SNRNP40
U5 small nuclear ribonucleoprotein 40 kDa protein.
    
  0.846
CSKR_9414s
Uncharacterized protein.
   
  0.839
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4.
    
  0.838
snrnp27
U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein.
    
  0.835
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.