STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF19BRBR-type E3 ubiquitin transferase. (481 aa)    
Predicted Functional Partners:
Ube2l3
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.789
GGCT
Gamma-glutamylcyclotransferase.
    
 0.782
ari-2
RBR-type E3 ubiquitin transferase.
    
 0.777
RpL40
Large subunit ribosomal protein L40e.
    
  0.777
ZFAND4
AN1-type zinc finger protein 4.
   
 0.753
ZFAND4-2
AN1-type zinc finger and ubiquitin domain-containing protein 1.
   
 0.753
Birc6
Baculoviral IAP repeat-containing protein 6.
    
 0.752
CSKR_13560s
Uncharacterized protein.
    
 0.719
RBX1A
RING-box protein 1a.
    
 0.678
Roc1a
RING-box protein 1A.
    
 0.678
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.