STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Herc4Putative E3 ubiquitin-protein ligase HERC4. (351 aa)    
Predicted Functional Partners:
tp53
Cellular tumor antigen p53.
    
 0.752
Ube2l3
Ubiquitin-conjugating enzyme E2 L3; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.743
CSKR_3572s
Catenin beta.
    
 0.687
Rad23b
UV excision repair protein RAD23-like protein B.
    
 0.669
ZFAND4
AN1-type zinc finger protein 4.
    
 0.648
ZFAND4-2
AN1-type zinc finger and ubiquitin domain-containing protein 1.
    
 0.648
ube2n
Putative ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.637
ube2d2
Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.635
CSKR_13560s
Uncharacterized protein.
    
 0.631
Ubqln1
Ubiquilin-1.
    
 0.611
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.