STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LONRF1LON peptidase N-terminal domain and RING finger protein 1. (377 aa)    
Predicted Functional Partners:
CSKR_12149s
53-BP1_Tudor domain-containing protein.
    
 0.781
ube2n
Putative ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.775
RpL40
Large subunit ribosomal protein L40e.
    
 0.771
GGCT
Gamma-glutamylcyclotransferase.
    
 
0.747
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
     
 0.709
BRCA1
Breast cancer type 1 susceptibility-like protein.
    
 0.689
CUL1
Cullin-1; Belongs to the cullin family.
   
 0.657
Cul3
Cullin-3; Belongs to the cullin family.
   
 0.657
CTTNBP2
Cortactin-binding protein 2.
    
 0.654
BARD1
BRCA1-associated RING domain protein 1.
    
 0.654
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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