STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Htatsf1HIV Tat-specific factor 1-like protein. (369 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3B subunit 1.
    
 
 0.928
ddx46
Putative ATP-dependent RNA helicase DDX46.
   
 0.912
Crnkl1
Crooked neck-like protein 1.
   
 
 0.899
SF3A2
Splicing factor 3A subunit 2.
   
 
 0.858
SNRPA1
U2 small nuclear ribonucleoprotein A.
    
 
 0.817
SF3B2
Splicing factor 3B subunit 2.
   
 
 0.779
Sf3b3
Splicing factor 3B subunit 3.
    
 
 0.774
Sf3a1
Splicing factor 3A subunit 1.
    
 
 0.714
SF3A3
Splicing factor 3A subunit 3.
    
 
 0.683
DDX21
Nucleolar RNA helicase 2.
    
 0.664
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.