STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM147Transmembrane protein. (197 aa)    
Predicted Functional Partners:
ncl1-2
Nicalin-1.
    
 
 0.914
Tmco1
Transmembrane and coiled-coil domains protein 1.
   
 
 0.907
CCDC47
Coiled-coil domain-containing protein 47.
    
 
 0.905
sec61al1
Protein transport protein Sec61 subunit alpha-like 1.
   
 
 0.878
lin9
Protein lin-9-like protein.
    
 0.849
ncl1
Nicalin-1.
    
 
 0.825
Rbbp4
Histone-binding protein RBBP4.
   
 0.824
RpL11
60S ribosomal protein L11.
   
   0.799
RpL32
60S ribosomal protein L32.
    
   0.793
Rpl38
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
   0.793
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.