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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ClbnNuclear export mediator factor NEMF-like protein. (1026 aa)    
Predicted Functional Partners:
LTN1
E3 ubiquitin-protein ligase listerin.
    
 
 0.973
RPL12
60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.919
rpl5-a
60S ribosomal protein L5-A.
    
   0.917
rpl-23
Large subunit ribosomal protein L23e; Belongs to the universal ribosomal protein uL14 family.
   
   0.914
mrpl22
39S ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
    
   0.911
MED1
Mediator of RNA polymerase II transcription subunit 1.
    
   0.824
RPL9
60S ribosomal protein L9.
    
   0.824
Tcf25
Transcription factor 25.
    
 
 0.809
RpL11
60S ribosomal protein L11.
   
   0.808
CSKR_1884s
Uncharacterized protein.
   
   0.806
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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