STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LARP7La-related protein 7. (634 aa)    
Predicted Functional Partners:
CLF_107910
7SK snRNA methylphosphate capping enzyme.
    
 
 0.973
cdk9
Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.
   
 0.885
CDK9
Cyclin-dependent kinase 9.
   
 0.885
CCNT2
Cyclin-T2; Belongs to the cyclin family.
   
 0.848
Ncbp1
Nuclear cap-binding protein subunit 1.
   
 0.736
Cbp20
Nuclear cap-binding protein subunit 2.
   
 0.724
Snrpb2
U2 small nuclear ribonucleoprotein B.
   
 0.707
SRSF2
Serine/arginine-rich splicing factor 2.
   
 0.697
Srsf4
Serine/arginine-rich splicing factor 4.
    
 0.693
SF3B1
Splicing factor 3B subunit 1.
   
 0.690
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.