STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPTFNucleosome-remodeling factor subunit BPTF. (2959 aa)    
Predicted Functional Partners:
Smarca1
Putative global transcription activator SNF2L1.
   
 
 0.962
Rbbp4
Histone-binding protein RBBP4.
    
 
 0.917
NIPBL
Nipped-B protein.
   
    0.812
PPA2
Inorganic pyrophosphatase 2.
    
 
 0.769
dom-2
Helicase domino.
   
 
 0.724
CHD1L
Chromodomain-helicase-DNA-binding protein 1-like.
   
 
 0.724
Hells
Lymphocyte-specific helicase.
   
 
 0.724
rbbp4
Histone-binding protein RBBP4.
    
 
 0.715
Caf1
Putative histone-binding protein Caf1.
    
 
 0.715
Bap18
Chromatin complexes subunit BAP18.
    
 0.714
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.