STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LbrLamin-B receptor. (1210 aa)    
Predicted Functional Partners:
CYP1A1
Cytochrome P450 1A1; Belongs to the cytochrome P450 family.
   
 0.743
CSKR_11594s
Uncharacterized protein.
   
 0.737
med27-b
Mediator of RNA polymerase II transcription subunit 27-B.
    
 0.736
Coq6
Ubiquinone biosynthesis monooxygenase COQ6.
   
 
0.724
LIPK
Lipase member K.
    
 0.657
Mbd2
Methyl-CpG-binding domain protein 2.
    
 0.634
Hmgcs2
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
   
  
 0.630
KPNB1
Importin subunit beta-1.
    
  0.628
Soat1
Sterol O-acyltransferase 1; Belongs to the membrane-bound acyltransferase family.
    
 0.627
Dgat1
Diacylglycerol O-acyltransferase 1; Belongs to the membrane-bound acyltransferase family.
    
 0.627
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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