STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsm14b-bProtein LSM14-like protein B-B. (483 aa)    
Predicted Functional Partners:
cgh-1
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
   
 
 0.993
CSKR_3444s
Uncharacterized protein.
   
 
 0.967
CSKR_12576s
Uncharacterized protein.
    
 
 0.866
DCP1A
mRNA-decapping enzyme 1A.
    
 
 0.818
PABPC1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.780
dbp4
ATP-dependent RNA helicase dbp4; Belongs to the DEAD box helicase family.
    
 
 0.681
ddx20
Putative ATP-dependent RNA helicase DDX20.
    
 
 0.661
CSKR_13432s
Y-box factor-like protein.
   
 
 0.655
CSKR_10798s
Y-box factor-like protein.
   
 
 0.655
DDX18
RNA helicase.
   
 
 0.654
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.