STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSKR_1875sRanBP2-type domain-containing protein. (235 aa)    
Predicted Functional Partners:
Taf12
Transcription initiation factor TFIID subunit 12.
   
  0.860
Taf4b
Transcription initiation factor TFIID subunit 4B.
   
  0.840
TAF5
Transcription initiation factor TFIID subunit 5.
    
  0.837
Taf11
Transcription initiation factor TFIID subunit 11.
    
  0.823
HNRNPL
Heterogeneous nuclear ribonucleoprotein L.
   
 0.818
TARDBP
TAR DNA-binding protein 43.
   
 0.814
TARDBP-2
TAR DNA-binding protein 43.
   
 0.814
TAF13
Transcription initiation factor TFIID subunit 13.
   
 0.813
TBP
TATA-box-binding protein.
   
 0.801
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.791
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.