STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCP1-4Digestive cysteine proteinase 1; Belongs to the peptidase C1 family. (514 aa)    
Predicted Functional Partners:
Rps14
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 0.528
SEC13
Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
  0.474
Gak
Cyclin-G-associated kinase.
     
 0.437
sec23a
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 
 0.431
sec22b
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
     
 0.424
GRN
Granulin-like protein.
   
 0.423
Mrpl38
39S ribosomal protein L38.
   
 
 0.423
Grn
Granulin-like protein.
   
 0.423
GRN-2
Granulin-like protein.
   
 0.423
CLF_104181
Protein jagged-1a.
    
 0.422
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.