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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cpsf7Cleavage and polyadenylation specificity factor subunit 7. (557 aa)    
Predicted Functional Partners:
cpsf5
Cleavage and polyadenylation specificity factor subunit 5.
   
 0.995
CSTF2
Cleavage stimulation factor subunit 2.
   
 0.870
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.868
Cstf1
Cleavage stimulation factor subunit 1.
    
 0.843
U2af50
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.838
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
    
 0.825
Ythdc2
Putative ATP-dependent RNA helicase YTHDC2.
   
 0.811
Cpsf1
Cleavage and polyadenylation specificity factor subunit 1.
   
 0.803
SYMPK
Symplekin.
   
 0.795
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.786
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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