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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDK2AP2Cyclin-dependent kinase 2-associated protein 2. (149 aa)    
Predicted Functional Partners:
Mbd2
Methyl-CpG-binding domain protein 2.
   
 
 0.705
GATAD2B
Transcriptional repressor p66-beta.
    
 
 0.653
Rbbp4
Histone-binding protein RBBP4.
   
 
 0.631
CHD4
Chromodomain-helicase-DNA-binding protein 4.
    
 
 0.621
hdac3
Histone deacetylase 3.
   
 
 0.558
HDAC2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.558
MTA2
Metastasis-associated protein MTA2.
    
 
 0.549
MTA1
Metastasis-associated protein MTA1.
    
 
 0.549
rbbp4
Histone-binding protein RBBP4.
   
 
 0.535
Caf1
Putative histone-binding protein Caf1.
   
 
 0.535
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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