STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPIHPeptidyl-prolyl cis-trans isomerase H. (673 aa)    
Predicted Functional Partners:
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4.
    
 0.994
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
    
 0.991
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.978
WBP4
WW domain-binding protein 4.
    
 0.922
LSM4
U6 snRNA-associated Sm-like protein LSm4.
   
 0.887
Lsm7
U6 snRNA-associated Sm-like protein LSm7.
   
 0.880
Eftud2
U5 small nuclear ribonucleoprotein component.
   
 0.880
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 0.876
Lsm2
U6 snRNA-associated Sm-like protein LSm2.
   
 0.863
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.861
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.