STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sconBPutative E3 ubiquitin ligase complex SCF subunit sconB. (564 aa)    
Predicted Functional Partners:
Skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.990
CUL1
Cullin-1; Belongs to the cullin family.
    
 0.935
Cul3
Cullin-3; Belongs to the cullin family.
    
 0.935
RBX1A
RING-box protein 1a.
    
 0.871
Roc1a
RING-box protein 1A.
    
 0.871
FBXW11
F-box/WD repeat-containing protein 11.
  
0.803
lin-23
F-box/WD repeat-containing protein lin-23.
  
0.802
Wee1
Wee1-like protein kinase 2.
    
 0.778
Cdc6
Cell division control protein 6-like protein.
    
 0.761
MRPL2
39S ribosomal protein L2 mitochondrial.
    
 0.735
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.