STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSKR_10500sNAD(P)H-hydrate epimerase. (208 aa)    
Predicted Functional Partners:
cgh-1
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
    
 0.973
DCP1A
mRNA-decapping enzyme 1A.
   
 0.972
PNPO
Pyridoxine-5'-phosphate oxidase.
   
 0.953
CARKD
ATP-dependent (S)-NAD(P)H-hydrate dehydratase; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
  
 
 0.944
DCP2
M7GpppN-mRNA hydrolase.
  
 0.923
CSKR_8006s
Uncharacterized protein.
  
 0.923
edc4
Enhancer of mRNA-decapping protein 4.
   
 0.858
LSM4
U6 snRNA-associated Sm-like protein LSm4.
   
 0.847
NUDT14
Uridine diphosphate glucose pyrophosphatase.
  
 0.808
Lsm2
U6 snRNA-associated Sm-like protein LSm2.
   
 0.806
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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