Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gigyf2-2PERQ amino acid-rich with GYF domain-containing protein 2. (1164 aa)    
Predicted Functional Partners:
CSKR_11321s
Uncharacterized protein.
    
 
 0.900
cgh-1
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
    
 
 0.897
CSKR_7350s
UBA domain-containing protein.
   
 
 0.780
CSKR_3888s
Uncharacterized protein.
   
 
 0.780
eif3i
Eukaryotic translation initiation factor 3 subunit I.
    
 
 0.718
CYP1A1
Cytochrome P450 1A1; Belongs to the cytochrome P450 family.
    
 
 0.715
cnot1
CCR4-NOT transcription complex subunit 1.
   
 
 0.666
CLF_105665
Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.
    
 
 0.642
vcp
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
   0.628
Sf1
Splicing factor 1.
   
 
 0.601
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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