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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpa-1-3Transient receptor potential cation channel subfamily A member 1-like protein. (733 aa)    
Predicted Functional Partners:
Trpm6
Transient receptor potential cation channel subfamily M member 6.
     
 0.773
CSKR_5509s
Uncharacterized protein.
    
 0.709
Trpm
Transient receptor potential cation channel trpm.
     
 0.687
Trpm-2
Transient receptor potential cation channel trpm; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.639
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.633
mars
Methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 0.622
CSKR_9411s
Kinesin-like calmodulin-binding-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.615
ZFAND4
AN1-type zinc finger protein 4.
    
 0.594
ZFAND4-2
AN1-type zinc finger and ubiquitin domain-containing protein 1.
    
 0.594
Ift81
Intraflagellar transport protein 81-like protein.
    
 0.592
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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