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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
absATP-dependent RNA helicase abstrakt; Belongs to the DEAD box helicase family. (689 aa)    
Predicted Functional Partners:
PPWD1
Peptidylprolyl isomerase domain and WD repeat-containing protein 1.
   
 0.829
Nkap
NF-kappa-B-activating protein.
    
  0.812
NOS1AP
Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein.
    
   0.763
CDC40
Pre-mRNA-processing factor 17.
    
  0.751
DHX9
ATP-dependent RNA helicase A.
    
 0.734
Dhx8
ATP-dependent RNA helicase DHX8.
   
 0.714
DHX34
Putative ATP-dependent RNA helicase DHX34.
   
 0.714
Srrm1
Serine/arginine repetitive matrix protein 1.
    
  0.709
Alyref2
Aly/REF export factor 2.
   
  0.699
DHX38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.688
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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