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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALKBH1DNA oxidative demethylase ALKBH1. (423 aa)    
Predicted Functional Partners:
CSKR_7812s
JmjC domain-containing protein 4-like protein.
   
  
 0.569
ALKBH4
Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 4.
   
  
 0.565
TRMT6
tRNA (Adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6.
   
  
 0.558
N6AMT1
HemK methyltransferase family member 2.
      
 0.557
alkbh8
Alkylated DNA repair protein alkB-like protein 8.
      
 0.554
ALKBH7
Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 7.
      
 0.550
Mllt4
Afadin.
    
  0.548
Mllt4-2
Afadin.
    
  0.548
NSUN4
5-methylcytosine rRNA methyltransferase NSUN4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
      
 0.533
TRMT112
Multifunctional methyltransferase subunit Uncharacterized protein.
   
 
 0.516
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.