STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin9Protein lin-9-like protein. (847 aa)    
Predicted Functional Partners:
RBL1
Retinoblastoma-like protein 1.
   
 0.941
E2F5
Transcription factor E2F5.
    
 0.902
CSKR_13483s
HTH myb-type domain-containing protein.
    
 0.892
mybL
Myb-like protein L.
    
 0.892
TFDP1
Transcription factor Dp-1.
   
 0.874
rbbp4
Histone-binding protein RBBP4.
    
 0.861
Caf1
Putative histone-binding protein Caf1.
    
 0.861
Rbbp4
Histone-binding protein RBBP4.
    
 0.861
lin54
Protein lin-54-like protein.
   
 0.855
Lin54
Protein lin-54-like protein.
   
 0.855
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.