STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serpinb1Leukocyte elastase inhibitor; Belongs to the serpin family. (215 aa)    
Predicted Functional Partners:
MIMI_L669
Collagen-like protein 7.
    
 0.501
CLF_104181
Protein jagged-1a.
    
 0.483
sec22b
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
   
  0.470
UBE2C
Ubiquitin-conjugating enzyme E2 C; Belongs to the ubiquitin-conjugating enzyme family.
      
 0.468
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
    
  0.462
Nsf2
Vesicle-fusing ATPase 2; Belongs to the AAA ATPase family.
    
  0.454
CSKR_4121s
Uncharacterized protein.
   
  0.435
MMP25
Matrix metalloproteinase-25.
   
  0.435
ELSPBP1
Epididymal sperm-binding protein 1.
   
  0.435
CLF_107150
Uncharacterized protein.
   
  0.435
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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