STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Depdc5-2DEP domain-containing protein 5. (1262 aa)    
Predicted Functional Partners:
mios
WD repeat-containing protein mio.
   
 0.976
CSKR_1941s
Uncharacterized protein.
   
 0.976
wdr24
WD repeat-containing protein 24.
    
 0.975
Nprl3
Nitrogen permease regulator 3-like protein.
    
 0.975
Nprl2
Nitrogen permease regulator 2-like protein.
    
 0.975
CLF_106340
Uncharacterized protein.
    
 0.958
Szt2
Protein SZT2.
    
 0.954
seh1l
Nucleoporin seh1; Belongs to the WD repeat SEC13 family.
    
 0.952
SEC13
Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.950
RragB
Ras-related GTP-binding protein B.
    
 0.949
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.