STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSKR_2990sDUF4200 domain-containing protein. (379 aa)    
Predicted Functional Partners:
Prdm4
PR domain zinc finger protein 4.
   
 0.738
Prdm9-2
Histone-lysine N-methyltransferase PRDM9.
   
 0.738
EED
Polycomb protein EED.
    
 0.736
Su(z)12
Polycomb protein Su(Z)12.
    
 0.727
tp53
Cellular tumor antigen p53.
    
 0.725
Rbbp5
Retinoblastoma-binding protein 5-like protein.
    
 0.704
ash2
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.703
RpL40
Large subunit ribosomal protein L40e.
    
  0.653
Kdm6a
Lysine-specific demethylase 6A.
    
 0.636
H2AFY
Core histone macro-H2A.1.
   
 0.635
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.