STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSKR_7630sUncharacterized protein. (222 aa)    
Predicted Functional Partners:
CSKR_11844s
Ribosome biogenesis protein BRX1-like protein.
   
 
 0.981
FTSJ3
Pre-rRNA processing protein FTSJ3.
   
 
 0.947
EBNA1BP2
Putative rRNA-processing protein EBP2.
   
 
 0.944
ddx55
ATP-dependent RNA helicase DDX55; Belongs to the DEAD box helicase family.
   
 0.941
GTPBP4
Nucleolar GTP-binding protein 1.
   
 
 0.938
nop2
25S rRNA (Cytosine-C(5))-methyltransferase nop2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.936
DDX18
RNA helicase.
   
 0.903
Mrto4
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
 
 0.889
CSKR_2355s
Ribosome biogenesis protein WDR12-like protein.
   
 
 0.889
rsl24d1
Putative ribosome biogenesis protein RLP24.
   
 
 0.887
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.