STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LDB1LIM domain-binding protein 1. (1026 aa)    
Predicted Functional Partners:
Ssbp3
Single-stranded DNA-binding protein 3.
    
 
 0.966
lhx3
LIM/homeobox protein Lhx3.
    
 0.903
TCF12
Transcription factor 12.
    
 0.836
hand2
Heart-and neural crest derivatives-expressed protein 2.
    
 0.730
tcf21
Transcription factor 21.
    
 0.730
ptf1a
Pancreas transcription factor 1 subunit alpha.
    
 0.730
ASCL4
Achaete-scute-like protein 4.
    
 0.730
CLF_102142
Achaete-scute homolog 2.
    
 0.730
arx
Aristaless-related homeobox protein.
    
 0.709
Lmx1a
LIM homeobox transcription factor 1-alpha.
    
 0.709
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.