STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Scfd1Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family. (833 aa)    
Predicted Functional Partners:
STX5
Syntaxin-5; Belongs to the syntaxin family.
    
 0.997
YKT6
Synaptobrevin-like protein YKT6; Belongs to the synaptobrevin family.
    
 0.992
sec22b
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
   
 0.992
Napa
Alpha-soluble NSF attachment protein.
    
 0.990
GOSR1
Golgi SNAP receptor complex member 1.
    
 
 0.983
Nsf2
Vesicle-fusing ATPase 2; Belongs to the AAA ATPase family.
   
 0.979
stx18
Syntaxin-18.
    
 
 0.971
Uso1
General vesicular transport factor.
   
 0.924
use1
Vesicle transport protein USE1.
    
 
 0.902
CSKR_387s
Ras-related protein ORAB-1.
    
 0.892
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.