STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP1Transcription factor TFIIIB component B''-like protein. (499 aa)    
Predicted Functional Partners:
TBP
TATA-box-binding protein.
    
 0.995
Brf1
Transcription factor IIIB 90 kDa subunit.
    
 0.995
POLR3F
DNA-directed RNA polymerase III subunit RPC6.
    
 0.987
POLR3A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.985
POLR3E
DNA-directed RNA polymerase III subunit RPC5.
    
 0.984
GTF3C3
General transcription factor 3C polypeptide 3.
   
 0.971
POLR3C
DNA-directed RNA polymerase III subunit RPC3.
    
 0.966
CRCP
DNA-directed RNA polymerase III subunit RPC9.
    
 0.964
Polr3h
DNA-directed RNA polymerase III subunit RPC8.
    
 0.954
Polr1c
DNA-directed RNA polymerases I and III subunit RPAC1.
    
 0.939
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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