STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf12-bE3 ubiquitin-protein ligase RNF12-B. (483 aa)    
Predicted Functional Partners:
ube2d2
Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.929
RpL40
Large subunit ribosomal protein L40e.
    
 0.902
UBC11
Ubiquitin-conjugating enzyme E2 D/E.
   
 0.838
GGCT
Gamma-glutamylcyclotransferase.
    
 0.731
ZFAND4
AN1-type zinc finger protein 4.
   
 0.724
ZFAND4-2
AN1-type zinc finger and ubiquitin domain-containing protein 1.
   
 0.724
Ubc2
Ubiquitin-conjugating enzyme E2-24 kDa; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.686
Ube2e3
Ubiquitin-conjugating enzyme E2 D/E.
   
 0.686
CSKR_13560s
Uncharacterized protein.
    
 0.684
Ube2k
Ubiquitin-conjugating enzyme (Huntingtin interacting protein 2); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.667
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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