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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103035057Ribosomal modification protein rimK-like family member A. (405 aa)    
Predicted Functional Partners:
nat8l
N-acetyltransferase 8-like.
     
 0.954
aspa
Aspartoacylase.
     
  0.900
LOC103045952
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.865
idh3b
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
    
 0.865
nags
N-acetylglutamate synthase.
    
 0.861
LOC103043721
Oxoglutarate dehydrogenase like.
   
 0.858
ogdh
Oxoglutarate (alpha-ketoglutarate) dehydrogenase b (lipoamide).
   
 0.858
OGDH
Oxoglutarate dehydrogenase.
   
 0.858
cs
Citrate synthase; Belongs to the citrate synthase family.
    
 0.853
idh2
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
     
 0.837
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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