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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K0H6_ASTMXSi:ch211-189k9.2. (643 aa)    
Predicted Functional Partners:
nicn1
Nicolin 1.
    
   0.683
lrrc49
Leucine rich repeat containing 49.
    
   0.562
ttll1
Tubulin tyrosine ligase-like family, member 1.
    
   0.562
fcsk
Fucose kinase.
      
 0.524
ttl
Tubulin tyrosine ligase.
    
   0.459
Cog7
Component of oligomeric golgi complex 7.
      
 0.420
ephx2
Epoxide hydrolase 2, cytoplasmic.
      
 0.412
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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