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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103023442Uncharacterized protein. (300 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog b; Belongs to the SKP1 family.
     
 0.526
cul5
Cullin 5a; Belongs to the cullin family.
     
 0.518
rchy1
Ring finger and CHY zinc finger domain containing 1.
      
 0.513
cand1
Cullin-associated and neddylation-dissociated 1.
     
 0.499
LOC103033844
Cullin-associated and neddylation-dissociated 2 (putative).
     
 0.499
ccdc22
Coiled-coil domain containing 22.
     
 0.465
piwil1
Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family.
      
 0.412
piwil2
Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.
      
 0.412
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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