rnaseh2c protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rnaseh2c

Ribonuclease H2, subunit C. (135 aa)

Predicted Functional Partners:

rnaseh2b

0.979

W5JYN8_ASTMX

0.967

ctdp1

0.578

skiv2l

0.574

atrip

0.552

ENSAMXP00000052495

0.511

LOC103038624

0.441

c2h16orf72

0.441

POLR2E

0.438

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000052495	POLR2E	ENSAMXP00000052495	ENSAMXP00000019476	Damage-specific DNA binding protein 1.	RNA polymerase II subunit E.	0.907
ENSAMXP00000052495	rnaseh2b	ENSAMXP00000052495	ENSAMXP00000014859	Damage-specific DNA binding protein 1.	Ribonuclease H2, subunit B.	0.472
ENSAMXP00000052495	rnaseh2c	ENSAMXP00000052495	ENSAMXP00000001231	Damage-specific DNA binding protein 1.	Ribonuclease H2, subunit C.	0.511
LOC103038624	W5JYN8_ASTMX	ENSAMXP00000028215	ENSAMXP00000000448	Zgc:77849.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.433
LOC103038624	rnaseh2c	ENSAMXP00000028215	ENSAMXP00000001231	Zgc:77849.	Ribonuclease H2, subunit C.	0.441
POLR2E	ENSAMXP00000052495	ENSAMXP00000019476	ENSAMXP00000052495	RNA polymerase II subunit E.	Damage-specific DNA binding protein 1.	0.907
POLR2E	ctdp1	ENSAMXP00000019476	ENSAMXP00000028670	RNA polymerase II subunit E.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.937
POLR2E	rnaseh2c	ENSAMXP00000019476	ENSAMXP00000001231	RNA polymerase II subunit E.	Ribonuclease H2, subunit C.	0.438
POLR2E	skiv2l	ENSAMXP00000019476	ENSAMXP00000011871	RNA polymerase II subunit E.	SKI2 homolog, superkiller viralicidic activity 2-like.	0.462
W5JYN8_ASTMX	LOC103038624	ENSAMXP00000000448	ENSAMXP00000028215	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Zgc:77849.	0.433
W5JYN8_ASTMX	c2h16orf72	ENSAMXP00000000448	ENSAMXP00000032095	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Zgc:66160.	0.433
W5JYN8_ASTMX	ctdp1	ENSAMXP00000000448	ENSAMXP00000028670	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.521
W5JYN8_ASTMX	rnaseh2b	ENSAMXP00000000448	ENSAMXP00000014859	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Ribonuclease H2, subunit B.	0.997
W5JYN8_ASTMX	rnaseh2c	ENSAMXP00000000448	ENSAMXP00000001231	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	Ribonuclease H2, subunit C.	0.967
atrip	rnaseh2c	ENSAMXP00000053480	ENSAMXP00000001231	ATR interacting protein.	Ribonuclease H2, subunit C.	0.552
c2h16orf72	W5JYN8_ASTMX	ENSAMXP00000032095	ENSAMXP00000000448	Zgc:66160.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.433
c2h16orf72	rnaseh2c	ENSAMXP00000032095	ENSAMXP00000001231	Zgc:66160.	Ribonuclease H2, subunit C.	0.441
ctdp1	POLR2E	ENSAMXP00000028670	ENSAMXP00000019476	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	RNA polymerase II subunit E.	0.937
ctdp1	W5JYN8_ASTMX	ENSAMXP00000028670	ENSAMXP00000000448	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.521
ctdp1	rnaseh2b	ENSAMXP00000028670	ENSAMXP00000014859	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	Ribonuclease H2, subunit B.	0.552