Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Zranb1Uncharacterized protein. (687 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.924
Hectd1
HECT domain containing 1.
   
 
 0.896
rps27a
Ribosomal protein S27a.
    
  0.839
UBB
Ubiquitin B.
    
 0.822
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.810
cttnbp2nl
CTTNBP2 N-terminal like b.
    
 
 0.801
LOC103036086
CTTNBP2 N-terminal like a.
    
 
 0.801
metap1
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
   0.784
LOC103043275
TNF receptor-associated factor.
    
 0.762
pgam5
PGAM family member 5, serine/threonine protein phosphatase, mitochondrial.
    
 
 0.757
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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