W5K1C8_ASTMX protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5K1C8_ASTMX

GTPase activating protein and VPS9 domains 1. (1407 aa)

Predicted Functional Partners:

rabep1

0.889

rabep2

0.809

rab21

0.794

LOC103034209

0.789

LOC103038585

0.789

LOC103035226

0.789

rab5c

0.789

LOC103027170

0.789

vps29

0.704

W5K2B1_ASTMX

0.699

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103027170	W5K1C8_ASTMX	ENSAMXP00000054845	ENSAMXP00000001388	RAB5A, member RAS oncogene family, a.	GTPase activating protein and VPS9 domains 1.	0.789
LOC103027170	W5K2B1_ASTMX	ENSAMXP00000054845	ENSAMXP00000001721	RAB5A, member RAS oncogene family, a.	Alsin Rho guanine nucleotide exchange factor ALS2 a.	0.551
LOC103027170	rab21	ENSAMXP00000054845	ENSAMXP00000039735	RAB5A, member RAS oncogene family, a.	RAB21, member RAS oncogene family.	0.422
LOC103027170	rabep1	ENSAMXP00000054845	ENSAMXP00000053797	RAB5A, member RAS oncogene family, a.	Rabaptin, RAB GTPase binding effector protein 1.	0.826
LOC103027170	rabep2	ENSAMXP00000054845	ENSAMXP00000031587	RAB5A, member RAS oncogene family, a.	Rabaptin, RAB GTPase binding effector protein 2.	0.545
LOC103034209	W5K1C8_ASTMX	ENSAMXP00000015419	ENSAMXP00000001388	RAB5B, member RAS oncogene family.	GTPase activating protein and VPS9 domains 1.	0.789
LOC103034209	W5K2B1_ASTMX	ENSAMXP00000015419	ENSAMXP00000001721	RAB5B, member RAS oncogene family.	Alsin Rho guanine nucleotide exchange factor ALS2 a.	0.551
LOC103034209	rab21	ENSAMXP00000015419	ENSAMXP00000039735	RAB5B, member RAS oncogene family.	RAB21, member RAS oncogene family.	0.438
LOC103034209	rabep1	ENSAMXP00000015419	ENSAMXP00000053797	RAB5B, member RAS oncogene family.	Rabaptin, RAB GTPase binding effector protein 1.	0.826
LOC103034209	rabep2	ENSAMXP00000015419	ENSAMXP00000031587	RAB5B, member RAS oncogene family.	Rabaptin, RAB GTPase binding effector protein 2.	0.545
LOC103035226	W5K1C8_ASTMX	ENSAMXP00000053988	ENSAMXP00000001388	Uncharacterized protein.	GTPase activating protein and VPS9 domains 1.	0.789
LOC103035226	W5K2B1_ASTMX	ENSAMXP00000053988	ENSAMXP00000001721	Uncharacterized protein.	Alsin Rho guanine nucleotide exchange factor ALS2 a.	0.551
LOC103035226	rab21	ENSAMXP00000053988	ENSAMXP00000039735	Uncharacterized protein.	RAB21, member RAS oncogene family.	0.420
LOC103035226	rabep1	ENSAMXP00000053988	ENSAMXP00000053797	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 1.	0.826
LOC103035226	rabep2	ENSAMXP00000053988	ENSAMXP00000031587	Uncharacterized protein.	Rabaptin, RAB GTPase binding effector protein 2.	0.545
LOC103038585	W5K1C8_ASTMX	ENSAMXP00000036371	ENSAMXP00000001388	RAB5A, member RAS oncogene family, b.	GTPase activating protein and VPS9 domains 1.	0.789
LOC103038585	W5K2B1_ASTMX	ENSAMXP00000036371	ENSAMXP00000001721	RAB5A, member RAS oncogene family, b.	Alsin Rho guanine nucleotide exchange factor ALS2 a.	0.551
LOC103038585	rab21	ENSAMXP00000036371	ENSAMXP00000039735	RAB5A, member RAS oncogene family, b.	RAB21, member RAS oncogene family.	0.422
LOC103038585	rabep1	ENSAMXP00000036371	ENSAMXP00000053797	RAB5A, member RAS oncogene family, b.	Rabaptin, RAB GTPase binding effector protein 1.	0.826
LOC103038585	rabep2	ENSAMXP00000036371	ENSAMXP00000031587	RAB5A, member RAS oncogene family, b.	Rabaptin, RAB GTPase binding effector protein 2.	0.545