close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103038513RAN binding protein 3b. (519 aa)    
Predicted Functional Partners:
ENSAMXP00000037182
Regulator of chromosome condensation 1.
    
 
 0.762
W5KZA4_ASTMX
Uncharacterized protein.
     
 0.719
nup50
Nucleoporin 50.
     
 0.628
W5L3N7_ASTMX
Nucleoporin 62 like.
   
 
 0.608
nxt2
Nuclear transport factor 2-like export factor 2.
     
 0.591
rae1
Ribonucleic acid export 1.
   
 
 0.583
exosc10
Exosome component 10.
   
    0.571
LOC103026867
Retinitis pigmentosa GTPase regulator b.
    
 
 0.569
RPGR
Uncharacterized protein.
    
 
 0.569
W5K6B4_ASTMX
Exportin 1 (CRM1 homolog, yeast) a.
    
 
 0.557
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.