Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103031680Synapsin I. (632 aa)    
Predicted Functional Partners:
syt1
Synaptotagmin Ia.
   
 0.780
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.720
RIMS2-2
Regulating synaptic membrane exocytosis 2.
   
 
 0.720
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.715
LOC103042251
Synaptotagmin IIa.
   
 0.697
LOC103032718
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.687
LOC103024379
Solute carrier family 17 member 7a.
   
 0.686
vamp2
Vesicle-associated membrane protein 2.
   
 0.655
W5JZI3_ASTMX
C2 domain-containing protein.
   
 0.641
LOC103029888
Synaptotagmin Vb.
   
 0.641
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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