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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bvesBlood vessel epicardial substance. (359 aa)    
Predicted Functional Partners:
LOC103025779
Tight junction protein 1b; Belongs to the MAGUK family.
     
 0.923
Pms1
PMS1 homolog 1, mismatch repair system component.
      
 0.505
W5KR14_ASTMX
Potassium channel, subfamily K, member 2b; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.502
cep19
Centrosomal protein 19.
      
 0.497
vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
      
 0.471
trappc11
Trafficking protein particle complex 11.
      
 0.437
tbccd1
TBCC domain containing 1.
      
 0.412
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.405
ankrd37
Ankyrin repeat domain 37.
      
 0.402
LOC103021746
Ankyrin repeat domain 10b.
      
 0.402
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.