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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K1M9_ASTMXSi:ch73-234b20.5. (96 aa)    
Predicted Functional Partners:
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.975
snap29
Synaptosome associated protein 29.
   
 0.971
LOC103036711
Vesicle-associated membrane protein 8 (endobrevin).
  
  
0.961
stx17
Syntaxin 17; Belongs to the syntaxin family.
   
 0.960
W5KJM9_ASTMX
Uncharacterized protein.
     
 0.944
ENSAMXP00000031362
Uncharacterized protein.
     
 0.944
ENSAMXP00000037400
Uncharacterized protein.
     
 0.944
ENSAMXP00000041639
SH3 domain-containing protein.
     
 0.944
ENSAMXP00000045117
EH domain-containing protein.
     
 0.944
ENSAMXP00000052579
Uncharacterized protein.
     
 0.944
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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