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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Arfgef1ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited). (1493 aa)    
Predicted Functional Partners:
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
    
 0.719
ENSAMXP00000029413
Si:ch73-193c12.2.
    
 0.716
LOC103042126
Zgc:171459.
    
 0.716
sec63
SEC63 homolog, protein translocation regulator.
   
  
 0.702
W5K380_ASTMX
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
   
 
0.639
LOC111193896
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
   0.613
pi4kb
Phosphatidylinositol 4-kinase, catalytic, beta; Belongs to the PI3/PI4-kinase family.
    
 
 0.560
ARF6
ADP ribosylation factor 6.
   
 0.542
W5LTZ3_ASTMX
ADP-ribosylation factor 6b; Belongs to the small GTPase superfamily. Arf family.
   
 0.542
ENSAMXP00000033560
Rho GTPase activating protein 21a.
      
 0.520
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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