W5K1S8_ASTMX protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5K1S8_ASTMX

Si:dkey-219c3.2. (1042 aa)

Predicted Functional Partners:

taf11

0.946

taf12

0.946

taf7l

0.946

taf2

0.946

ENSAMXP00000053049

0.946

ENSAMXP00000054367

0.946

LOC103030866

0.920

taf13

0.919

LOC103031530

0.908

ENSAMXP00000031926

0.906

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAMXP00000031926	ENSAMXP00000053049	ENSAMXP00000031926	ENSAMXP00000053049	TAFH domain-containing protein.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.946
ENSAMXP00000031926	ENSAMXP00000054367	ENSAMXP00000031926	ENSAMXP00000054367	TAFH domain-containing protein.	Transcription initiation factor TFIID subunit.	0.946
ENSAMXP00000031926	LOC103030866	ENSAMXP00000031926	ENSAMXP00000053222	TAFH domain-containing protein.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.920
ENSAMXP00000031926	LOC103031530	ENSAMXP00000031926	ENSAMXP00000020161	TAFH domain-containing protein.	TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.900
ENSAMXP00000031926	W5K1S8_ASTMX	ENSAMXP00000031926	ENSAMXP00000001538	TAFH domain-containing protein.	Si:dkey-219c3.2.	0.906
ENSAMXP00000031926	taf11	ENSAMXP00000031926	ENSAMXP00000011681	TAFH domain-containing protein.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.946
ENSAMXP00000031926	taf12	ENSAMXP00000031926	ENSAMXP00000035997	TAFH domain-containing protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.946
ENSAMXP00000031926	taf13	ENSAMXP00000031926	ENSAMXP00000026331	TAFH domain-containing protein.	TATA-box binding protein associated factor 13.	0.919
ENSAMXP00000031926	taf2	ENSAMXP00000031926	ENSAMXP00000047698	TAFH domain-containing protein.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.946
ENSAMXP00000031926	taf7l	ENSAMXP00000031926	ENSAMXP00000046184	TAFH domain-containing protein.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.946
ENSAMXP00000053049	ENSAMXP00000031926	ENSAMXP00000053049	ENSAMXP00000031926	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAFH domain-containing protein.	0.946
ENSAMXP00000053049	ENSAMXP00000054367	ENSAMXP00000053049	ENSAMXP00000054367	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.999
ENSAMXP00000053049	LOC103030866	ENSAMXP00000053049	ENSAMXP00000053222	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSAMXP00000053049	LOC103031530	ENSAMXP00000053049	ENSAMXP00000020161	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF4B RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.946
ENSAMXP00000053049	W5K1S8_ASTMX	ENSAMXP00000053049	ENSAMXP00000001538	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Si:dkey-219c3.2.	0.946
ENSAMXP00000053049	taf11	ENSAMXP00000053049	ENSAMXP00000011681	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSAMXP00000053049	taf12	ENSAMXP00000053049	ENSAMXP00000035997	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSAMXP00000053049	taf13	ENSAMXP00000053049	ENSAMXP00000026331	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
ENSAMXP00000053049	taf2	ENSAMXP00000053049	ENSAMXP00000047698	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSAMXP00000053049	taf7l	ENSAMXP00000053049	ENSAMXP00000046184	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999