W5K1T1_ASTMX protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5K1T1_ASTMX

Uncharacterized protein. (256 aa)

Predicted Functional Partners:

ccm2

0.572

psmg1

0.566

mre11

0.521

GHITM

0.511

Banp

0.507

W5LHV8_ASTMX

0.499

mtmr9

0.499

Eif2b3

0.475

arsg

0.412

acads

0.405

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Banp	Eif2b3	ENSAMXP00000045047	ENSAMXP00000009706	BTG3 associated nuclear protein.	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	0.441
Banp	GHITM	ENSAMXP00000045047	ENSAMXP00000004457	BTG3 associated nuclear protein.	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	0.530
Banp	W5K1T1_ASTMX	ENSAMXP00000045047	ENSAMXP00000001541	BTG3 associated nuclear protein.	Uncharacterized protein.	0.507
Banp	mre11	ENSAMXP00000045047	ENSAMXP00000035041	BTG3 associated nuclear protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.576
Eif2b3	Banp	ENSAMXP00000009706	ENSAMXP00000045047	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	BTG3 associated nuclear protein.	0.441
Eif2b3	GHITM	ENSAMXP00000009706	ENSAMXP00000004457	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	0.495
Eif2b3	W5K1T1_ASTMX	ENSAMXP00000009706	ENSAMXP00000001541	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	Uncharacterized protein.	0.475
Eif2b3	mre11	ENSAMXP00000009706	ENSAMXP00000035041	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.496
GHITM	Banp	ENSAMXP00000004457	ENSAMXP00000045047	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	BTG3 associated nuclear protein.	0.530
GHITM	Eif2b3	ENSAMXP00000004457	ENSAMXP00000009706	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	0.495
GHITM	W5K1T1_ASTMX	ENSAMXP00000004457	ENSAMXP00000001541	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	Uncharacterized protein.	0.511
GHITM	mre11	ENSAMXP00000004457	ENSAMXP00000035041	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.576
W5K1T1_ASTMX	Banp	ENSAMXP00000001541	ENSAMXP00000045047	Uncharacterized protein.	BTG3 associated nuclear protein.	0.507
W5K1T1_ASTMX	Eif2b3	ENSAMXP00000001541	ENSAMXP00000009706	Uncharacterized protein.	Eukaryotic translation initiation factor 2B, subunit 3 gamma.	0.475
W5K1T1_ASTMX	GHITM	ENSAMXP00000001541	ENSAMXP00000004457	Uncharacterized protein.	Growth hormone inducible transmembrane protein; Belongs to the BI1 family.	0.511
W5K1T1_ASTMX	W5LHV8_ASTMX	ENSAMXP00000001541	ENSAMXP00000019420	Uncharacterized protein.	Zgc:154055.	0.499
W5K1T1_ASTMX	acads	ENSAMXP00000001541	ENSAMXP00000043054	Uncharacterized protein.	Acyl-CoA dehydrogenase short chain.	0.405
W5K1T1_ASTMX	arsg	ENSAMXP00000001541	ENSAMXP00000008301	Uncharacterized protein.	Arylsulfatase G.	0.412
W5K1T1_ASTMX	ccm2	ENSAMXP00000001541	ENSAMXP00000037571	Uncharacterized protein.	CCM2 scaffold protein.	0.572
W5K1T1_ASTMX	mre11	ENSAMXP00000001541	ENSAMXP00000035041	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.521