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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcas3BCAS3 microtubule associated cell migration factor. (829 aa)    
Predicted Functional Partners:
c18h16orf70
Si:dkey-102f14.5.
   
 
 0.898
wipi2
WD repeat domain, phosphoinositide interacting 2.
   
 
 0.616
wipi1
WD repeat domain, phosphoinositide interacting 1.
   
 
 0.616
serpinc1
Serpin peptidase inhibitor, clade C (antithrombin), member 1; Belongs to the serpin family.
      
 0.579
W5KBS6_ASTMX
Interferon regulatory factor 9.
      
 0.543
axdnd1
Axonemal dynein light chain domain containing 1.
      
 0.525
ENSAMXP00000046366
Zinc finger protein 407.
      
 0.506
LOC103026808
Dystrobrevin binding protein 1b.
      
 0.499
JMY
Junction mediating and regulatory protein, p53 cofactor.
      
 0.441
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
      
 0.437
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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