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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K1U8_ASTMXSerine and arginine rich splicing factor 7a. (243 aa)    
Predicted Functional Partners:
LOC103045240
SRSF protein kinase 1b.
    
 0.916
W5LQW7_ASTMX
Serine and arginine rich splicing factor 1b.
   
 0.905
srsf1
Serine and arginine rich splicing factor 1a.
   
0.905
LOC103027270
Serine and arginine rich splicing factor 2a.
   
0.894
LOC103045376
Serine and arginine rich splicing factor 3a.
  
0.885
srsf3
Serine and arginine rich splicing factor 3.
   
0.883
LOC103033517
Serine and arginine rich splicing factor 9.
   
0.872
LOC103043711
Zgc:153681.
   
 0.805
LOC103026606
Nuclear RNA export factor 1.
   
 0.805
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.794
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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